RnoEX0001105 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161896518-161898144:-
Coord C1 exon
chr4:161898027-161898144
Coord A exon
chr4:161896914-161897025
Coord C2 exon
chr4:161896518-161896627
Length
112 bp
Sequences
Splice sites
3' ss Seq
CACCTCTGCTTATTTTTCAGCTG
3' ss Score
9.2
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTACATCTATGGCCAACCTGTGCGTGGAAAAGCCCAGATCAAAGTGTGCAGAGAGCTCTTCTCCCCGGGGTATTGTGAGAGCAACGAGAATGAAATCTGCGAGCAGTTCACTCTGCAG
Seq A exon
CTGAAAGATGGCTGTGCTTCTTACATTGTCAATACGAAAGTCTTCCAGCTGTACCGCTCTGGGTTGTTCATGACGTTGAATATCAACGGAGTCATTACAGAATCTGGAACAG
Seq C2 exon
GTGTACAGATCAGTAAGACACACTCAGTTTTTATCACCTCAGTGCTTGGCACTGTCAGCTTCGAGAACATGGACTCTTTCTACAGGAGAGGGATCCCTTATTTTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'12-8,'12-7,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTATGGCCAACCTGTGC
R:
AGGGATCCCTCTCCTGTAGAA
Band lengths:
214-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]