GgaEX6003317 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79481671-79483452:-
Coord C1 exon
chr1:79483298-79483452
Coord A exon
chr1:79482727-79482876
Coord C2 exon
chr1:79481671-79481841
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTACTCATTTCCAGCTC
3' ss Score
7.4
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTTCCACAGCTCCCTGGGGTACTTTTGCCATTACACTGGATGTCACTGAGAAGCTCACCCCCAGTGCCAGATTGTTGCTCTACACGGTCCATCCTGATGGGGAGATAGTGGCTGACAGCTCTTGGATACACAGTGATGTATGCTTCAAGAACAAG
Seq A exon
CTCCAGCTTGAGTTCTCTGAGAAGCAGGCTTATCCAGGCTCTAAAATCAACATCCATCTTGAAGCTGCTGCCAACTCCTATTGTGCCTTGCGAGCTGTAGATCAGAGTGTCTTCCTTCTTCAGCCTGAGCGAGAGTTATCTGCTGAGAGC
Seq C2 exon
GTGTACTACCGGCTTCATTTGAGTGATTTGTATGGCTATTATTACAATGGACTCAACCTGCAAGATGACCCACCAGAGGAGTGTACCCCAGTCAAAACCACTTTTTTTGATGGCTTGTACTATGAACCTGTCAATGTCAGCCATGATGGTGATGTCTACAGGATTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(33.8=100)
A:
PF077039=A2M_N_2=PD(25.8=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCCTGGGGTACTTTT
R:
GACTGGGGTACACTCCTCTGG
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]