BtaEX6024055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101155981-101160040:+
Coord C1 exon
chr5:101155981-101156136
Coord A exon
chr5:101156587-101156736
Coord C2 exon
chr5:101159870-101160040
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCCTTAATTTTAGGTT
3' ss Score
12.24
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATTTACACAGCCTGGAAGGGAAACATCTCCTTCCCCATCAATGTCAGTGCTGATCTGGCTCCTGTGGCTGTCATGCTTGTCTACACTCTTCACCCCAGTGGGGAAATCGTAGCTGACAGTGTCAAATTCCAGGTGGAAAAATGCTTTAAAAACAAG
Seq A exon
GTTAGCATAAAGTTCTCGAAGGAGCAGGGACTACCGGGCTCCAGCACTGATCTCCATCTTCAGGCATCCCCTGACTCGGTCTGTGCCCTCCGGGCTGTGGATAAAAGCGTTCTCCTATTGAAGTCAGAACAACAGCTGTCGGCGGAAAGT
Seq C2 exon
GTGTACAATATGCTCCCAAATACAGAACTGTATGGTTATTTCTATCGTGGTCTCAACCTTGATGATGGCAAGCTAGACCCTTGCATTCCTCAGAAAGATATGTTTTACAATGGCTTGTATTATATACCTGTAAGCAACCATGGGGATGGAGACATCTATGATATTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(34.0=100)
A:
PF077039=A2M_N_2=PD(26.0=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTGTCATGCTTGTCT
R:
CCATCCCCATGGTTGCTTACA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]