MmuEX6007303 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128511491-128517078:-
Coord C1 exon
chr6:128516933-128517078
Coord A exon
chr6:128516262-128516411
Coord C2 exon
chr6:128511491-128511661
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTACCCTTCTTCCACCTCAGGTT
3' ss Score
10.35
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCTGGAATGGGAACTTCTCTTTCCCAATCAGCATCAATGCTGATCTGGCGCCATCGGCTGACCTGTTCGTCTACACCCTCCACCCTAGCGGGGAAATCGTTGCGGATAATGTCAGGCTCCAGATCGAGAAGTGCTTTAAAAACAAG
Seq A exon
GTTAGCATAAACTTCTCACGGGATAAGGATCTACCGGGCTCTAACACCAGTGTTCATCTTCAAGCGGCCCCTGACTCCTTCTGTGCCCTGCGAGCAGTGGACAAAAGTGCCCTTCTACTGAACCACGGACAAGAAATGACACCTGAGAGC
Seq C2 exon
GTGTACTTCACACTCCCGTATATCCATCAATATGGCTATTTCTACAATGGCCTCAACTTGGATGATCAGCAAGCAGAACCATGCATTCCTCAGAAGGACTTATTCTACAATGGACTGTATTATACACCTACAGGCAATATTTGGGATGGAGACCTCTCTAATCTTCTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.7=100)
A:
PF077039=A2M_N_2=PD(26.5=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCTGACCTGTTCGTCTA
R:
GGTCTCCATCCCAAATATTGCCT
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: