RnoEX6015267 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161887783-161893307:-
Coord C1 exon
chr4:161893144-161893307
Coord A exon
chr4:161892448-161892597
Coord C2 exon
chr4:161887783-161887953
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTCTCCACTTCAGGTT
3' ss Score
12.01
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
ACCTGCCTGTTTCCACAGCCCAGAATGGAAACTTCTCCTTCCCAATCATCGTCACTGCTGATCTGGCGCCAGCAGCTGACCTGTTTGTCTACACCCTCCACCCCAGCGGGGAAATCGTTGCAGATAGTGTCAAGCTCCAGACTGAGAAGTGCTTTAAAAACAAG
Seq A exon
GTTAGCATAAAGTTCTCAAAGGAGCAGGACCTACCCGGCTCTAACACCAGCCTTCATCTTCAAGCGGCCCCTGGCTCCTTCTGTGCCCTGCGAGCGGTGGACAAAAGTGCCCTTCTACTGAACCACGGACAAGAAATGACACCAGAGAGT
Seq C2 exon
GTGTACAACATGCTCCCGTACGTCCATCAATATGGCTATTTCTACAATGGTCTCAACTTGGATGATGAGAGAGCTGACCCATGCATCCCTCAGAAGGACTTGTTCCACAATGGGCTGTATTATAAACCTACAAGCAATGTTTGGGATGGAGACCTCTCTAATCTTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(36.7=100)
A:
PF077039=A2M_N_2=PD(26.5=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCACAGCCCAGAATGG
R:
TTCTGAGGGATGCATGGGTCA
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]