GgaEX1041595 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79434038-79437004:-
Coord C1 exon
chr1:79436859-79437004
Coord A exon
chr1:79435693-79435842
Coord C2 exon
chr1:79434038-79434208
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTGATAAATTTCAGGTC
3' ss Score
8.56
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATCAAAATGGCACCTTCATGATTCCACTTGTGGTCAATGAGAAAATGGCTCCTGCCCTTCGGTTGCTTGTATATATGTTACATCCTGCCAAGGAGCTGGTAGCAGACAGTGTACGATTTTCAATTGAGAAGTGCTTCAAAAACAAG
Seq A exon
GTCCAGTTGCAATTCTCTGAAAAGCAGATGCTCACCACTTCCAATGTCAGTTTAGTGATTGAAGCTGCTGCTAATTCATTCTGTGCTGTGAGGGCAGTGGATAAAAGCATGCTGCTTCTGAAGAGTGAGACAGAGTTGTCTGCAGAAACA
Seq C2 exon
ATATACAACTTGCACCCCATTCAAGACCTACAAGGCTATATATTCAATGGGCTCAATCTAGAAGATGATCCACAAGACCCCTGTGTCTCATCTGATGACATCTTTCACAAAGGCTTATATTATAGACCTCTAACATCTGGATTAGGCCCAGATGTATATCAGTTCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.4=100)
A:
PF077039=A2M_N_2=PD(26.4=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTTCGGTTGCTTGTAT
R:
GGGCCTAATCCAGATGTTAGAGG
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]