MmuEX6007273 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128452194-128456896:-
Coord C1 exon
chr6:128456754-128456896
Coord A exon
chr6:128453491-128453640
Coord C2 exon
chr6:128452194-128452358
Length
150 bp
Sequences
Splice sites
3' ss Seq
TAATCATGTGCTCTTTACAGGTA
3' ss Score
9.53
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGAAAGGAGTCTTTTCCCTCCCAATTCAAGTGGAGCCAGGCATGGCTCCCGAGGCTCAGCTGCTCATTTATGCTATTTTACCTAATGAAGAACTTGTCGCTGATGCTCAGAATTTTGAAATCGAGAAGTGTTTTGCCAACAAG
Seq A exon
GTAAATTTGAGTTTCCCATCAGCACAGAGCCTGCCAGCCTCTGACACCCACCTGAAGGTCAAAGCCGCGCCTCTGTCCCTCTGTGCCCTCACTGCAGTAGACCAGAGTGTGCTGCTACTGAAGCCCGAAGCCAAGCTCTCACCTCAGTCA
Seq C2 exon
ATCTACAATTTGCTGCCAGGAAAGACTGTCCAGGGTGCCTTCTTTGGTGTCCCAGTGTACAAAGACCATGAGAACTGCATCAGCGGAGAAGACATCACTCACAATGGGATCGTGTACACGCCAAAGCACTCTCTGGGCGATAATGATGCACACAGCATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTGGAGCCAGGCATG
R:
GAGAGTGCTTTGGCGTGTACA
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: