MmuEX6007273 @ mm10
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128502176-128506878:-
Coord C1 exon
chr6:128506736-128506878
Coord A exon
chr6:128503477-128503622
Coord C2 exon
chr6:128502176-128502340
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAATCATGTGCTCTTTACAGGTA
3' ss Score
9.53
5' ss Seq
TCAGTCAGT
5' ss Score
-1.02
Exon sequences
Seq C1 exon
TGAAAGGAGTCTTTTCCCTCCCAATTCAAGTGGAGCCAGGCATGGCTCCCGAGGCTCAGCTGCTCATTTATGCTATTTTACCTAATGAAGAACTTGTCGCTGATGCTCAGAATTTTGAAATCGAGAAGTGTTTTGCCAACAAG
Seq A exon
GTAAATTTGAGTTTCCCATCAGCACAGAGCCTGCCAGCCTCTGACACCCACCTGAAGGTCAAAGCCGCGCCTCTGTCCCTCTGTGCCCTCACTGCAGTAGACCAGAGTGTGCTGCTACTGAAGCCCGAAGCCAAGCTCTCACCTCA
Seq C2 exon
ATCTACAATTTGCTGCCAGGAAAGACTGTCCAGGGTGCCTTCTTTGGTGTCCCAGTGTACAAAGACCATGAGAACTGCATCAGCGGAGAAGACATCACTCACAATGGGATCGTGTACACGCCAAAGCACTCTCTGGGCGATAATGATGCACACAGCATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'23-25,'23-24,24-25
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAAGTGGAGCCAGGCATG
R:
GAGAGTGCTTTGGCGTGTACA
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types