GgaEX6003279 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75729326-75730336:-
Coord C1 exon
chr1:75730194-75730336
Coord A exon
chr1:75729696-75729845
Coord C2 exon
chr1:75729326-75729496
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACCTACCTTTGGTTTTGCAGGTC
3' ss Score
10.74
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTACGGGATATTTCAGTTGATCTTACCTGTTGAGATGACAATTGCTCCCCTGGCACAGATGCTTGTGTATACCACTTCACCCAGTGGAGAAGTCATTGCTAGTACAGCAGAATTCCAGGTTGAAAGTTGCCTTCTCAATAAA
Seq A exon
GTCAACTTGAGTTTTGTACCCAAAGAAGAACTTCCTGCTTCCAAGACAATCCTGAAACTCCATTCCTCACCAAGGTCCCTGTGTGCCCTCCGTGCTGTGGACAGGAGCGTTCTCCTCATGAAGCCTGAAGATGAGCTCTCTCCCAGCTCT
Seq C2 exon
GTGTATAACCTTCTCCCAGTCAAGGAACTCCGAGGCTATAGCTTCAAGGACTACTACTTGGAAGAAGAAGATGTAAACCCCTGTGTGTCACTTGACAACATATTACTAAATGGATTCACCTATATACCCATTTCTCCTGATGGTGAAGGTGATGCTTATGACATTCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACAATTGCTCCCCTGGC
R:
CCTTCACCATCAGGAGAAATGGG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]