GgaEX6003279 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79370521-79371531:-
Coord C1 exon
chr1:79371389-79371531
Coord A exon
chr1:79370891-79371040
Coord C2 exon
chr1:79370521-79370691
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACCTACCTTTGGTTTTGCAGGTC
3' ss Score
10.74
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTTACGGGATATTTCAGTTGATCTTACCTGTTGAGATGACAATTGCTCCCCTGGCACAGATGCTTGTGTATACCACTTCACCCAGTGGAGAAGTCATTGCTAGTACAGCAGAATTCCAGGTTGAAAGTTGCCTTCTCAATAAA
Seq A exon
GTCAACTTGAGTTTTGTACCCAAAGAAGAACTTCCTGCTTCCAAGACAATCCTGAAACTCCATTCCTCACCAAGGTCCCTGTGTGCCCTCCGTGCTGTGGACAGGAGCGTTCTCCTCATGAAGCCTGAAGATGAGCTCTCTCCCAGCTCT
Seq C2 exon
GTGTATAACCTTCTCCCAGTCAAGGAACTCCGAGGCTATAGCTTCAAGGACTACTACTTGGAAGAAGAAGATGTAAACCCCTGTGTGTCACTTGACAACATATTACTAAATGGATTCACCTATATACCCATTTCTCCTGATGGTGAAGGTGATGCTTATGACATTCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.8=100)
A:
PF077039=A2M_N_2=FE(25.7=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACAATTGCTCCCCTGGC
R:
CCTTCACCATCAGGAGAAATGGG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]