MmuEX6006760 @ mm10
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121649767-121657547:+
Coord C1 exon
chr6:121649767-121649909
Coord A exon
chr6:121654465-121654614
Coord C2 exon
chr6:121657380-121657547
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCCTATCTGTCAGGTG
3' ss Score
10.36
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGAAAGGCCATTTCTCCATCCTCATCTCGATGGAGACAGACCTGGCTCCTGTAGCTCGACTGGTCCTTTATACCATTCTGCCCAATGGAGAAGTGGTTGGAGATACTGTTAAATATGAGATTGAAAAGTGCCTGGCCAACAAG
Seq A exon
GTGGATTTGGTCTTCCACCCAAATATCGGTCTTCCGGCCACACGTGCCTTCCTCAGTGTCATGGCTTCTCCTCAGTCTCTCTGTGGCCTGCGAGCTGTGGACCAAAGCGTACTGCTCACAAAGCCTGAGGCCGAACTCTCTGCATCCCTG
Seq C2 exon
GTTTATGATCTGCTACCAGTGAAAGACCTCACTGGCTTCCCTAAGGGTGTGAATCAACAGGAAGAAGACACTAATGGCTGCCTTAAGCAAAATGACACTTACATTAATGGAATCCTGTACTCCCCAGTACAGAATACAAATGAAGAGGACATGTATGGCTTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'10-17,'10-16,17-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTAGCTCGACTGGTCCTT
R:
GAAGCCATACATGTCCTCTTCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types