GgaEX1004298 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79349479-79352169:+
Coord C1 exon
chr1:79349479-79349621
Coord A exon
chr1:79351207-79351356
Coord C2 exon
chr1:79351999-79352169
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCCTATGGCTGCAGGTG
3' ss Score
7.83
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
Seq A exon
GTGGGCTTGAGCTTCTCTTCTTCTGAAGGCCTGCCTTCTTCTGACACTCACTTACTGTTCAGAGCCTCCCCAAAATCCCTTTGTGCTGTCCGTGCTGTGGACAGTAGTGTTCTACTCATGAAGCCTGAAGCTGATCTGTCACACAGCTCA
Seq C2 exon
GTGTATAGCTTGCTGCCAGTGAAGGAATTGCATGACTATCACCATGGTACAGACATGCTCTTGGAGGAGCCCTTAGAAGACTGTGTCCCCCTTAAGAAAATAATTCTGAATGGGATCACCTATTCTCCAGTAGTGGAGATGAATGAAGATGACACTTACAGCATTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGGAAGCTGACTTTG
R:
ACTGGAGAATAGGTGATCCCA
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]