GgaEX1004298 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75694102-75696795:+
Coord C1 exon
chr1:75694102-75694244
Coord A exon
chr1:75695833-75695982
Coord C2 exon
chr1:75696625-75696795
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATTTTTCCTATGGCTGCAGGTG
3' ss Score
7.83
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
Seq A exon
GTGGGCTTGAGCTTCTCTTCTTCTGAAGGCCTGCCTTCTTCTGACACTCACTTACTGTTCAGAGCCTCCCCAAAATCCCTTTGTGCTGTCCGTGCTGTGGACAGTAGTGTTCTACTCATGAAGCCTGAAGCTGATCTGTCACACAGCTCA
Seq C2 exon
GTGTATAGCTTGCTGCCAGTGAAGGAATTGCATGACTATCACCATGGTACAGACATGCTCTTGGAGGAGCCCTTAGAAGACTGTGTCCCCCTTAAGAAAATAATTCTGAATGGGATCACCTATTCTCCAGTAGTGGAGATGAATGAAGATGACACTTACAGCATTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'27-31,'27-30,28-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.0=100)
A:
PF077039=A2M_N_2=PD(26.5=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGGAAGCTGACTTTG
R:
ACTGGAGAATAGGTGATCCCA
Band lengths:
250-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]