DreEX6075792 @ danRer10
Exon Skipping
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17964339-17964997:+
Coord C1 exon
chr15:17964339-17964481
Coord A exon
chr15:17964586-17964735
Coord C2 exon
chr15:17964833-17964997
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCTGTGCTTGTACAGGTG
3' ss Score
8.04
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
AAAACAGGGGAGAAGTGACCTTCTCACTGAGGACGGCAGCTCTGGCTCCATACGCTCAGGTGGTGGTTTACACAATTCTTCCCAGTGGAGAAGCAGTAGCAGACAGTGTGAACTTCCCCATTGAAGAATGTTTGCCAAACAAG
Seq A exon
GTGTCCTTAAAGTTCTCATCTCCCACTGCACTGCCTGGAGAGAGGGCATCTTTTAGCCTGAAAGCCAGTCCTGGCTCCTTGTGCTCAGTGAGGGCCATAGATCAGAGTGTGCTGCTGCTGAGACCAGAGGCTGAGTTGAACGCAGACTCT
Seq C2 exon
GTGTTTGGAATGTTACCAGTCCAATTTTTGTCAGGTTACCCTTATAACGTTGAGGAGTTTGAGCTTTACAACTGCCCACCTTCCTGGGGAGGCGTAAGGGGCAAGCGCTCACGCTTCTATTACCCTTACTACGGCAACCGAAATGATGTCTATGAGATCTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCTCCATACGCTCAGG
R:
CGGTTGCCGTAGTAAGGGTAA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]