BtaEX6024114 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101316096-101320053:+
Coord C1 exon
chr5:101316096-101316238
Coord A exon
chr5:101317238-101317387
Coord C2 exon
chr5:101319886-101320053
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCCCCAATTCCACAGGTG
3' ss Score
10.32
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TGCAAGGCCATTTTTCCATGTCAGTCCCCGTGGAGTCAGACATTGCTCCTGTCGCTAGGCTGCTCATCTATGCCATTTTACCTGATGGAGAAGTGGTAGGGGATTCTGCAAGATATGAAATTGAACACTGTCTGGCCAACAAG
Seq A exon
GTGGGTTTGAACTTCAGCCCCGGACAAAGTTTCCCGGCCTCCCAGGCCCACCTTCGAGTCACCGCTTCCCCTCAGTCCCTCTGCGCCCTCCGCGCCGTGGACCAAAGTGTGCTGCTCATGAGGCCCGAAGCTGAGCTCTCAGCAGCCACG
Seq C2 exon
GTTTATAACCTGCTACCAGTCAAGGACCTCAGCAGTTTCCCCTCAAGTGTAAATCAACAGGAGGAAGACAATGAAGACTGCATCAGTCATGACAATGTCTATATCAATGGAATCATGTATTTCCCAGTATCAAATACAAATGAAAAAGATATGTATAGCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.179
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGGCCATTTTTCCATGT
R:
AGACATTGTCATGACTGATGCAGT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]