HsaEX1034627 @ hg38
Exon Skipping
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9544238-9551652:+
Coord C1 exon
chr12:9544238-9544292
Coord A exon
chr12:9545598-9545747
Coord C2 exon
chr12:9551453-9551652
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTCTCTACTTTAGGTT
3' ss Score
13.34
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
ATGATGGTAAAAGGAGCTATCTTACTCAGTGGACAAAAGGAAATCAGAAACAAAG
Seq A exon
GTTAACATAAAGTTCTCTAACGAGCAGGGCTTACCTGGTTCCAATGCTAGTCTCTGTCTTCAAGCGGCGCCTGTCTTATTCTGTGCCCTCAGGGCTGTGGATAGGAATGTCCTTCTACTGAAATCTGAACAACAGCTGTCAGCTGAAAGT
Seq C2 exon
GTGTATAACATGGTTCCAAGTATAGAGCCGTATGGTTATTTCTACCATGGCCTCAATCTTGATGATGGCAAGGAAGACCCTTGCATTCCTCAGAGGGATATGTTCTACAATGGTTTATATTACACACCTGTAAGCAACTATGGGGATGGAGATATCTATAATATTGTCAGGGTAAGATCACTAAGGATTTTGGAAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(26.1=100)
A:
PF077039=A2M_N_2=PD(29.5=78.0)
C2:
NO
Main Skipping Isoform:
ENST00000518709fB24800
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAGCTATCTTACTCAGTGGAC
R:
TTCCAAAATCCTTAGTGATCTTACCC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains