GgaEX6003318 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75838596-75840518:-
Coord C1 exon
chr1:75840369-75840518
Coord A exon
chr1:75839313-75839483
Coord C2 exon
chr1:75838596-75838728
Length
171 bp
Sequences
Splice sites
3' ss Seq
CAGTTGTTATCACCTCTCAGGTG
3' ss Score
6.22
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTCCAGCTTGAGTTCTCTGAGAAGCAGGCTTATCCAGGCTCTAAAATCAACATCCATCTTGAAGCTGCTGCCAACTCCTATTGTGCCTTGCGAGCTGTAGATCAGAGTGTCTTCCTTCTTCAGCCTGAGCGAGAGTTATCTGCTGAGAGC
Seq A exon
GTGTACTACCGGCTTCATTTGAGTGATTTGTATGGCTATTATTACAATGGACTCAACCTGCAAGATGACCCACCAGAGGAGTGTACCCCAGTCAAAACCACTTTTTTTGATGGCTTGTACTATGAACCTGTCAATGTCAGCCATGATGGTGATGTCTACAGGATTTTCAGG
Seq C2 exon
GAGATGGGCCTGAAGGTTTTCACCAACTCTACGCTACGGAAGCCAGTTTTGTGCAATGAAGACAAGTTGGATTGGGAAGAAAACCGTATCTATTTTGAACATGGTGCCAGTGGTGGTAGTGCCTTTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(25.8=78.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCTCTGAGAAGCAGGCT
R:
ACCACTGGCACCATGTTCAAA
Band lengths:
256-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]