RnoEX6015268 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161886927-161892597:-
Coord C1 exon
chr4:161892448-161892597
Coord A exon
chr4:161887783-161887953
Coord C2 exon
chr4:161886927-161887086
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACCGTGTACTCATCTCCTAGGTG
3' ss Score
9.89
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTTAGCATAAAGTTCTCAAAGGAGCAGGACCTACCCGGCTCTAACACCAGCCTTCATCTTCAAGCGGCCCCTGGCTCCTTCTGTGCCCTGCGAGCGGTGGACAAAAGTGCCCTTCTACTGAACCACGGACAAGAAATGACACCAGAGAGT
Seq A exon
GTGTACAACATGCTCCCGTACGTCCATCAATATGGCTATTTCTACAATGGTCTCAACTTGGATGATGAGAGAGCTGACCCATGCATCCCTCAGAAGGACTTGTTCCACAATGGGCTGTATTATAAACCTACAAGCAATGTTTGGGATGGAGACCTCTCTAATCTTGTCAGG
Seq C2 exon
AATATGGCTCTGAAAATCTTTACAAATATCCGTTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCTTTGCTGAGGACATTCAATGACCCAAATGAACGGATAATGATGTACGGTGGTGGTGGTGGTGGTGGCGCACCAGCTGCTTCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(26.5=78.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTACCCGGCTCTAAC
R:
ACCACCACCACCGTACATCAT
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]