GgaEX6003320 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79478331-79481086:-
Coord C1 exon
chr1:79480954-79481086
Coord A exon
chr1:79478932-79479019
Coord C2 exon
chr1:79478331-79478559
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTTAATCTCTCCTAGAAT
3' ss Score
8.28
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GAGATGGGCCTGAAGGTTTTCACCAACTCTACGCTACGGAAGCCAGTTTTGTGCAATGAAGACAAGTTGGATTGGGAAGAAAACCGTATCTATTTTGAACATGGTGCCAGTGGTGGTAGTGCCTTTGGCAAAG
Seq A exon
AATTTTCAAAGATTACTGCTGCTGGTGTTGTTAACACTGTTCGGAAATACTTCCCTGAGACCTGGATTTGGGATCTGGTTCACACTGA
Seq C2 exon
TTCCACTGGAGAGGCTAATATCTTCTACACCGTCCCTGATACCATCACAGAATGGAAAGCCAGTGCTTTCTGTTTGCAGGATGATGCTGGGTTTGGCATCTCCTCACCTGTTTCACTGACAGCATTCCAACCATTCTTTGTGGATCTTGCCTTGCCATACTCCGTCATTCGAGGAGAAAAAATTAATTTAATAGCCAACATTTTCAATTACCTTGACAAGTGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PU(9.9=30.0)
C2:
PF0020717=A2M=FE(83.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTGGTAGTGCCTTTGG
R:
TGGCAAGGCAAGATCCACAAA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]