BtaEX6024052 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101161721-101164712:+
Coord C1 exon
chr5:101161721-101161865
Coord A exon
chr5:101163940-101164036
Coord C2 exon
chr5:101164484-101164712
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTAGCTAGTGAAGTCA
3' ss Score
-7.87
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
GATATGGGTCTGAAAGTCTTCACCAATCTTCATTACCGGAAACCAGAAGTATGTTCAACAGAGACAAGCATGCCATACCGCGGGCCGCTCTATCTAGAATCGGGAGGATATGCACCCATGTACAGTGCCCCATTGAAAATTGCAT
Seq A exon
TCACAAGGGAGAATTTTGACTCCATAGAACGGGTTATAATTGAAACAGTAAGAACAAACTTTCCAGAAACATGGATTTGGGACCTGGTCAGCATTGA
Seq C2 exon
CTCCTCCGGTTCAGCAAATCTTTCATTCACCATCCCTGATACTATAACGCAATGGGAAGCAAGTGGCTTCTGTGTGAACAGTGAGGCTGGATTTGGCATTTCATCAATAGCTTCTCTGGAAGCCTCCCAACCTTTCTTTGTTGAAATAACCTCCCCCTCTTCAGTTGTTCGGAATGAACGGTCTGATCTGATTGTCAGTGTCTTCAGCTACCTGAATACCTGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PU(9.9=27.3)
C2:
PF0020717=A2M=FE(83.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGGAGGATATGCACCCAT
R:
GAAAGGTTGGGAGGCTTCCAG
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]