MmuEX6007305 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128508301-128510781:-
Coord C1 exon
chr6:128510634-128510781
Coord A exon
chr6:128509012-128509114
Coord C2 exon
chr6:128508301-128508529
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCATTTTAGTTC
3' ss Score
12.15
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AACATGGGTCTGAAAATCTTTACAAATCTCCATTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCCTTGCTGAGGACGTTCGATCACCCAAATGAACGGATAATGATGTACGGTGGTGGCGCCCCACCTTCTTCTGCCT
Seq A exon
TTCATGACTCTGTGGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTGAGGACAAACTTCCCCAGGACATGGATATGGAACCTTGTCAGTGTAGA
Seq C2 exon
TTCCTCAGGCACAGCAAATGTCTCGTTCCTGGTCCCTGATACCATCACCCAGTGGGAGGCCAGCGCCTTCTGTGTCAATGGCAATGCTGGGTTTGGCATTTCACCCAAAGTGTCCCTACAGATCTCCCAGCCCTTCTTCGTGGAAGTTACCTCACCCTTTTCCGTTGTTCGAAGTGAACAGAGTGACATGGTTGTCACTGTCTTCAACTACCTGACTACATGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PU(9.9=25.7)
C2:
PF0020717=A2M=FE(83.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTGTGTTCATCCCAGG
R:
CGAAGAAGGGCTGGGAGATCT
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: