RnoEX6015269 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161884929-161887086:-
Coord C1 exon
chr4:161886927-161887086
Coord A exon
chr4:161885614-161885716
Coord C2 exon
chr4:161884929-161885157
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTCTCTCGTTTTAGTTC
3' ss Score
12.64
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AATATGGCTCTGAAAATCTTTACAAATATCCGTTACCGGAAACCGGAAGTGTGTTCATCCCAGGAAAACCAGCCTTTGCTGAGGACATTCAATGACCCAAATGAACGGATAATGATGTACGGTGGTGGTGGTGGTGGTGGCGCACCAGCTGCTTCTGCCT
Seq A exon
TTCATGACGCTCCTGACAGCATCAGCCATGCAAAAGTGGCCATCAAAGAGACAGTCAGGACAAACTTCCCCAAGACCTGGCTGTGGAACCTCATCAGCGTGGA
Seq C2 exon
TTCCTCAGGCTCAACCAATGTTTCGTTCCTTGTCCCTGATACCATCACCCAGTGGCAGGCCAGCACCTTCTGTGTCAACGGCAATGCTGGGTTCGGCATTTCACCCAAAGTGTCCCTACAAATCTCCCAGCCCTTCTTCATGGAAGTTACCTCACCCTTTTCTGTTGTTCGAAGTGAACAGAGTGACCTCATTGTCACTGTCTTCAACTACCGGACTACATGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PU(9.9=25.7)
C2:
PF0020717=A2M=FE(83.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTGTGTTCATCCCAGG
R:
GGGCTGGGAGATTTGTAGGGA
Band lengths:
250-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]