GgaEX6006026 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:174779816-174781046:+
Coord C1 exon
chr1:174779816-174779921
Coord A exon
chr1:174780534-174780631
Coord C2 exon
chr1:174780951-174781046
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTGACTTCTTTCTTCCTAGGAG
3' ss Score
10.12
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGTAGGTATGTTGGGTATTATGAGATCCTGAAAAACAAGTATAACTTCCAACTCCCACCAGAGAGACAACTCAAAATAAAAAACCTCAAAATCCACTCTATACATG
Seq A exon
GAGTTGGGAAAGGCAATGGAACTGATATGAAGGTGCAGATAATAATGAAAAAGCAAGTTGTGTTGGAATGTGTGTGTGCCACACAAGGAAACTGCAAG
Seq C2 exon
CTCTTCTTTGATTCTGAAAGTGACTCTGTAGTCATTGGCTTGGAAGACAGCCCTGTTATAAGTGGTGATGTGAAAGTCAGATTTGAATCTAATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'17-14,'17-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=PU(12.3=47.2)
A:
PF104094=PTEN_C2=FE(23.2=100)
C2:
PF104094=PTEN_C2=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATGTTGGGTATTATGAGATCCT
R:
TCACCACTTATAACAGGGCTGTC
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]