RnoEX0093128 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74573012-74581907:-
Coord C1 exon
chr16:74581802-74581907
Coord A exon
chr16:74578564-74578655
Coord C2 exon
chr16:74573012-74573104
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCACTTTCACTCAGGTG
3' ss Score
9.55
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATAGATATGTTAAATATTTTGAAAAACTGAAAACTAGCTACCAATTGACTCTTCCTCCAAAAAAAGTACTTGTGATAAAAAGATTCACTGTTTACTCCATTCATG
Seq A exon
GTGTTGGAAAAGGCAATGGAAGTGATCTAGAAATACAAATAATGATGTGGCAGGAGACGATTTTTTCCTGTTTTAATTCCAAAAATTGTATG
Seq C2 exon
ATATTTCATGATGTTGAAACAGACAAAGTAATAATTAATGTGTTCAACTGTCCGGCTCTATATGATGATGTAAAAGTGAAATTTCTCTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'30-35,'30-33,31-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=PU(12.6=47.2)
A:
PF104094=PTEN_C2=FE(22.2=100)
C2:
PF104094=PTEN_C2=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAGCTACCAATTGACTCTTCCT
R:
CGGACAGAGAAATTTCACTTTTACA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]