MmuEX6034801 @ mm9
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:23465938-23476478:+
Coord C1 exon
chr8:23465938-23466043
Coord A exon
chr8:23469867-23469958
Coord C2 exon
chr8:23476386-23476478
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCACTTTCACCCAGGCG
3' ss Score
6.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AATAGATATGTGAAATATTTTGAAAAACTGAAAATTAACTACCAACTAACTCTCCCTCCCAAAAAAGTACTCGTGATAAAAAGATTGGTCGTTTATTCCATTCATG
Seq A exon
GCGTTGGAAAAGGCGACGGGAGTGACCTGGAAGTACAAATCATAATGTGGCAGGAGACTGTTTTTTCCTTTTGTAATTCCAGGAATTGTATG
Seq C2 exon
ATATTTCATGACCCTGAAACAGACAGAGCAATAATCAATGTGTTCCATTGCCCGGCTCTATACGATGATGTGAAAGTGAAATTTCTCTCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'25-28,'25-25,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=PU(12.6=47.2)
A:
PF104094=PTEN_C2=FE(22.2=100)
C2:
PF104094=PTEN_C2=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTAACTACCAACTAACTCTCCCT
R:
CGGAGAGAGAAATTTCACTTTCACA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: