GgaEX6006357 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178330992-178343707:-
Coord C1 exon
chr1:178343614-178343707
Coord A exon
chr1:178334552-178334840
Coord C2 exon
chr1:178330992-178331157
Length
289 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTTACTGAAGATT
3' ss Score
7.32
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACCAAGACTGGTGTAGGACCTTTCAATCCTGGTAGAATGAATGTGGCTGGCGATGTATTTCAAAATGGAGAATCTGTGACTCATCATAATCCTG
Seq A exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
Seq C2 exon
AGATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'17-20,'17-17,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.473 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACTGGTGTAGGACCTT
R:
ACAGATAGTGCATCTTGACTTATTCA
Band lengths:
244-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]