Special

MmuEX6041802 @ mm9

Exon Skipping

Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57521533-57531954:+
Coord C1 exon
chr14:57521533-57522389
Coord A exon
chr14:57529915-57530197
Coord C2 exon
chr14:57531789-57531954
Length
283 bp
Sequences
Splice sites
3' ss Seq
CTATATATTTTGTTTTTAAGATT
3' ss Score
8.13
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AATTGTTATTGATGATGAAGAGGACATGGAAACAAATCAAGGACAAGAGAAGAGTTCCTCAAATTTTATTGAAAGGAGACCTTCTGAAACTAAAAACAGAACTAATGATGTGGATTTCTCCAGTTCCACTTTTTCAAGAAGTAAAGTAAACGCAGGAGTGAGTAACAGTGGTATTACCACAGAGCCAGACTCGGAGATTCAGATTGCTAATGTTACAACCTTAGAAACAGGCGTAAGCTCTGTGAGTGATGGCCAGCTAGAAAGTACTGATGGGAGAGATATGAACTTAATGATTACTCATGTCACATCACTGCACAACACCAGCCTGGGAGATGGCTCCAACGGACTTCAGTCCAGTAACTTTGGTGTGAATATACAAACGTACACCCCATCTCTAACGTCACAGACCAAGGCTGGAGTTGGACCTTTTAATCCTGGTAGGATGAATGTTGCAGGAGATGTATTTCAGAATGGAGAGTCTGCACCTCATCACAATCCTG
Seq A exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAACGCAAAGGATCAGCTCACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
Seq C2 exon
AGATATAACTACAATGAAGGGAACCATTGTTGCTCAAGTGGACTCAAGTGAGTCCTTCCAAGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAACAGAGTCCTGCTAAAGGAGCTCTAAATAAATCAAGATGCACAATCTGTGGCAAATTAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.982 A=0.337 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF064679=zf-FCS=WD(100=43.2),PF064679=zf-FCS=PU(28.9=13.7)

							
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000022511f1127A





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000022511, ENSMUSP00000022511f5690A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr13:20002850-20003135 
HIGH PSI
HsaEX6039456
(ZMYM2)
Human
(hg19)
chr13:20576990-20577275 
HIGH PSI
HsaEX6039456
(ZMYM2)
Rat
(rn6)
chr15:37179037-37179319 
Cow
(bosTau6)
chr12:36430513-36430798 
HIGH PSI
BtaEX6056648
(ZMYM2)
Chicken
(galGal4)
chr1:178334552-178334840 
HIGH PSI
GgaEX6006357
([1])
Chicken
(galGal3)
chr1:183390669-183390957 
HIGH PSI
GgaEX6006357
([2])
Zebrafish
(danRer10)
chr9:21638864-21639149 
HIGH PSI
DreEX6035991
(zmym2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTGAGTGATGGCCAGCTAGA

				
R: 
ACTTGAGCAACAATGGTTCCCT

				
Band lengths: 
299-582

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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