GgaEX6006863 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192400925-192402404:-
Coord C1 exon
chr1:192402262-192402404
Coord A exon
chr1:192402056-192402169
Coord C2 exon
chr1:192400925-192401078
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGTTGCTCTTCTTCTGCAGGCC
3' ss Score
10.29
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTTTTGGGAATGCAAAGACGATCCGTAATGACAACTCCAGCCGATTTGGGAAGTACATTGACATCCACTTCAACAAAAGGGGAGCCATCGAGGGGGCCAAGATTGAGCAGTACCTGCTGGAGAAGTCCCGGGTCTGCAGACAG
Seq A exon
GCCCAGGACGAGAGGAATTACCACGTGTTCTACTGCATGCTGAGAGGAATGACAATGGAGCAGAAGAAGAAGCTGGGTCTTGGGAAAGCCACAGACTACAACTATCTTGCAATG
Seq C2 exon
GGTAACTGCACAACCTGCGATGGCAGAGATGACAGCAAGGAATATGCCAACATCCGCTCTGCCATGAAGGTCCTTATGTTCACCGACACAGAAAACTGGGAGATCTCCAAGCTGCTGGCTGCCATCCTGCACATGGGGAACCTGAAGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.6=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAGCCGATTTGGGAAG
R:
CTTCAGGTTCCCCATGTGCAG
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]