MmuEX6012386 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98095629-98097530:-
Coord C1 exon
chr7:98097388-98097530
Coord A exon
chr7:98097108-98097221
Coord C2 exon
chr7:98095629-98095782
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATCCTGGTGCCCACTTCCAGGCC
3' ss Score
7.39
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CATTTGGGAACGCCAAGACCATCCGCAACGACAACTCTAGCCGCTTTGGCAAGTACATTGACATCCACTTTAACAAGCGTGGTGCCATCGAGGGCGCCAAAATAGAGCAATACCTGCTGGAGAAGTCACGTGTCTGCCGCCAG
Seq A exon
GCCCCTGACGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAACTGGGCCTAGGCCAGGCCGCTGACTACAACTACTTGGCCATG
Seq C2 exon
GGTAACTGCATCACCTGTGAGGGCCGCGTGGACAGTCAGGAGTATGCCAACATCCGCTCTGCCATGAAGGTTCTCATGTTCACAGACACGGAGAACTGGGAGATCTCGAAGCTTCTGGCTGCCATCCTACACATGGGCAATCTGCAGTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'25-21,'25-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(5.6=100)
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAACTCTAGCCGCTTTG
R:
CATGTGTAGGATGGCAGCCAG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types