GgaEX6009976 @ galGal4
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3121209-3121888:-
Coord C1 exon
chr12:3121772-3121888
Coord A exon
chr12:3121526-3121668
Coord C2 exon
chr12:3121209-3121323
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTGGCTCTCTTGCAGACC
3' ss Score
10.9
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
Seq A exon
ACCCCAAATTCGTGGCTGCTTACATGATCCCAGACAACGATGATCGAGACGATGACAAAGCCTATTTCTTCTTCACGGAGAAGGTGGTGGAGGCAGACAGCAAGGAGCACACCATCGTCAGCCGGGTGGCACGGGTCTGCGTG
Seq C2 exon
AATGATGCTGGAGGCCAGAGGGTGCTGGTCAACAAGTGGAGCACCTTCAACAAAGCCCGCCTGGTGTGCTCTGTCCCGGGTCCTGGCGGCATTGATACCCATTTTGATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'4-12,'4-11,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(10.5=100)
C2:
PF0140314=Sema=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTATGCTGGCCTCACTG
R:
ATCAAAATGGGTATCAATGCCGC
Band lengths:
218-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]