RnoEX6054744 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7307379-7308117:+
Coord C1 exon
chr16:7307379-7307495
Coord A exon
chr16:7307661-7307806
Coord C2 exon
chr16:7308003-7308117
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTACCCTGTGACCTTCTCAGATC
3' ss Score
9.73
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTGGGGAGCTGTACACGGGCCTCACTGCTGATTTCCTCGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
Seq A exon
ATCCCCGGTTTGTGATGGCTGCTCGGATCCCAGATAACTCCGACCGGGATGATGACAAAGTGTACTTCTTCTTCTCTGAGACTGTCCCTTCACCAGATGGTGGCCCAGGTCATGTCACCGTCAGCCGCGTGGGTCGAGTCTGTGTG
Seq C2 exon
AATGATGCTGGTGGCCAGCGGGTGCTGGTGAATAAATGGAGCACGTTCCTCAAGGCCAGGCTGGTATGCTCTGTGCCTGGCCCTGGCGGGGCTGAGACTCACTTTGACCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'8-9,'8-6,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(10.8=100)
C2:
PF0140314=Sema=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGAGCTGTACACGGG
R:
GGTCAAAGTGAGTCTCAGCCC
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]