GgaEX6009978 @ galGal3
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2947756-2948471:-
Coord C1 exon
chr12:2948327-2948471
Coord A exon
chr12:2947919-2948150
Coord C2 exon
chr12:2947756-2947847
Length
232 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTCCTGTCCCTGCAGTGT
3' ss Score
9.28
5' ss Seq
CGGGTATGC
5' ss Score
7.73
Exon sequences
Seq C1 exon
CCATGTCTTTCAGGGCTCCGCCGTCTGTGTCTACCGCATGGCCGACATCCGTGAAGTCTTCAACGGGCCCTTTGCCCACCGGGACAGCCCCCTCCACCAGTGGGGAGCCTACGAGGGCCGTGTGCCCTACCCGCGCCCGGGCGTG
Seq A exon
TGTCCCAGCAAGACCACCAACCAGCCCCGGAGGCCATACAGCAGCACCAAGGAGCTGCCTGACGAGGTGCTGCACTTTGCCCGCGCTCACCCCCTCATGTACAGGGCTGTGCGCCCACGGCATCACCGCCCGCTGCTGGTGAAGACTGACCTGCAGCAGCGCCTGCTCCAGCTTGTGGTGGACCGTGTAGATACTGAGGATGGGCAGCATGATGTCCTCTTCTTAGGGACGG
Seq C2 exon
ATGCAGGCTCGGTGCTGAAGGTGGTGGTGCTGCAGAAGCAGAGCTCAGCTGTGACAGAAGAAGTTGTCCTGGAGGAGCTGCAGGTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.2=100)
A:
PF0140314=Sema=FE(19.6=100)
C2:
PF0140314=Sema=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCTTTCAGGGCTCCG
R:
TTAAAGACCTGCAGCTCCTCC
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]