RnoEX6054741 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7308594-7309360:+
Coord C1 exon
chr16:7308594-7308738
Coord A exon
chr16:7308948-7309179
Coord C2 exon
chr16:7309269-7309360
Length
232 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTGCTGCCACCCAGTGT
3' ss Score
5.93
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGCTGTGTTCCGGGGCTTTGCTGTCTGTGTGTACCACATGGTAGACATCTGGGAGGTCTTCAACGGGCCCTTCGCTCACCGAGATGGCCCTCAACATCAGTGGGGACCCTATGGGGGCAAGGTGCCCTTCCCCCGGCCTGGTGTG
Seq A exon
TGTCCCAGCAAGATGACCGCACAGCCCGGCCGACCCTTTGGCAGCACCAAGGACTACCCGGATGAGGTGCTGCAGTTTGTCCGAGGCCACCCGCTCATGTTCCAGCCTGTGAGGCCTCGGCGTGGCCGCCCCGTCCTGGTCAAAACTCACCTGGCTCAGCAACTGTGCCAGATCGTGGTGGACAGAGTGGAGGCTGAGGATGGGACCTACGATGTCATCTTCCTAGGGACTG
Seq C2 exon
ATTCAGGTTCTGTGCTCAAAATCATCGCTCTCCAGGGTAGTGGCTTACCCGAACCGGAAGAGGTGGTTCTGGAGGAGCTCCAGGTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(10.8=100)
A:
PF0140314=Sema=FE(17.3=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTCCGGGGCTTTG
R:
CTTAAACACCTGGAGCTCCTC
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]