GgaEX6011648 @ galGal3
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
NA
Coordinates
chr13:14471961-14472712:+
Coord C1 exon
chr13:14471961-14471987
Coord A exon
chr13:14472509-14472580
Coord C2 exon
chr13:14472676-14472712
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCAGTGTTTCATTTCTGCAGGGC
3' ss Score
8.5
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGTCCTCCAGGAATCCAGGGGCCTAAA
Seq A exon
GGCTTGGATGGTGCAAAGGGAGAAAAAGGTGACAGCGGTGAGAAGGGGGAGCGCGGCGACGCAGGCCCAGCT
Seq C2 exon
GGTCTCCCTGGTGCCCCAGGGCTCATTGGCTTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.8=100)
A:
PF0139113=Collagen=FE(39.7=100)
C2:
PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=PU(15.8=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAATCCAGGGGCCTAAA
R:
GTAAGCCAATGAGCCCTGGG
Band lengths:
55-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]