GgaEX6012102 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2260679-2262385:+
Coord C1 exon
chr14:2260679-2260841
Coord A exon
chr14:2262059-2262208
Coord C2 exon
chr14:2262282-2262385
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTGTGGTGCGGCTGTTCCAGGTG
3' ss Score
7.08
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
Seq A exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
Seq C2 exon
GGGAACCTTTCAGCCTCAGGTCCTTCAGCATTGCTCCAATCAACATCACCTTCCTCATGCTCTTTGGGGACAGGTTTGACTATAAGGATCCAACATTTCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'5-2,'5-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGAAGAATACGGCCCG
R:
TCAAACCTGTCCCCAAAGAGC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]