GgaEX6012102 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2254066-2255826:+
Coord C1 exon
chr14:2254066-2254228
Coord A exon
chr14:2255446-2255595
Coord C2 exon
chr14:2255669-2255826
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTGTGGTGCGGCTGTTCCAGGTG
3' ss Score
7.08
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
Seq A exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
Seq C2 exon
GGGAACCTTTCAGCCTCAGGTCCTTCAGCATTGCTCCAATCAACATCACCTTCCTCATGCTCTTTGGGGACAGGTTTGACTATAAGGATCCAACATTTCTCACTCTCCTAAGACTCATAGATGAAGTTATGGTTCTTCTGGGATCTCCGTACTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'7-2,'7-1,8-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(32.5=100)
A:
PF0006717=p450=FE(30.1=100)
C2:
PF0006717=p450=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTGACTGGGTACGAAG
R:
ACGGAGATCCCAGAAGAACCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]