GgaEX6013096 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14031514-14033295:-
Coord C1 exon
chr14:14033188-14033295
Coord A exon
chr14:14032872-14032967
Coord C2 exon
chr14:14031514-14031636
Length
96 bp
Sequences
Splice sites
3' ss Seq
GACACAGCACTGCATTACAGGCA
3' ss Score
1.61
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
AACTTCATCCACCGGAAGCTGGAGGAGAAGGAGGAGGCCATCAACAAGCTGCACGCAGATGGAGACCAGCTGCTGGCCCAGAACCATCCTGGGAAGAATGCCATTGAG
Seq A exon
GCACACATCGAGGCGGTCCACGCCGACTGGAAGGAGTACCTCAACTTCCTGATCTGCGAGGAGAGCCACCTCAAGTTCATGGAGGACTTCCACAAG
Seq C2 exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGGAGGCCATCAACA
R:
TCTGTCCTTGAACTCTGGGCT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]