HsaEX6042183 @ hg38
Exon Skipping
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4885094-4899120:-
Coord C1 exon
chr16:4899013-4899120
Coord A exon
chr16:4897675-4897770
Coord C2 exon
chr16:4885094-4885113
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCCCTTCTCTTCCTGGCAGGCG
3' ss Score
10.69
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AATTTCATCAACCGGAACCTGGAGGCCAAAGAGGAGAGAATCAACAAACTGCACAGCGAGGGCGACCAGCTGCTGGCGGCCGAGCACCCCGGGAGGAACTCCATTGAG
Seq A exon
GCGCACATGGAGGCTGTGCACGCAGACTGGAAGGAGTACCTGAACCTGCTCATCTGCGAGGAGAGCCACCTCAAGTACATGGAGGACTACCACCAG
Seq C2 exon
ACCCCAAGGCGGAAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898_MULTIEX1-6/18=5-C2
Average complexity
C3
Mappability confidence:
89%=89=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.031 C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(33.7=100)
A:
PF0043516=Spectrin=PD(22.1=71.9)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCATCAACCGGAACCTGGA
R:
TTCACTTTCCGCCTTGGGGT
Band lengths:
127-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains