HsaEX6042192 @ hg38
Exon Skipping
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4885094-4889061:-
Coord C1 exon
chr16:4888978-4889061
Coord A exon
chr16:4888102-4888218
Coord C2 exon
chr16:4885094-4885113
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATGTCTCTCCCTCATGCAGGAC
3' ss Score
11.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AACCTGCTAGATGAGATAGCAAGTAGGGAGCAGGAAGTACAGAAGATCTGTGCCAATTCCCAGCAGTACCAGCAAGCTGTAAAG
Seq A exon
GACTATGAGTTAGAAGCAGAAAAACTAAGGTCTCTTCTCGACTTGGAGAATGGAAGGAGAAGCCACGTGAGCAAGAGAGCCAGGCTCCAATCTCCTGCCACCAAAGTGAAGGAAGAG
Seq C2 exon
ACCCCAAGGCGGAAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898_MULTIEX1-17/18=16-C2
Average complexity
C3
Mappability confidence:
95%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.378 C2=NA
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=PD(16.5=75.0)
A:
PF0026115=Tropomyosin=PD(10.7=41.0)
C2:
NA
Main Skipping Isoform:
ENST00000345988fB23177
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGATGAGATAGCAAGTAGGGA
R:
TTCACTTTCCGCCTTGGGGT
Band lengths:
99-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains