MmuEX6060707 @ mm9
Exon Skipping
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5091938-5093372:-
Coord C1 exon
chr16:5093289-5093372
Coord A exon
chr16:5092458-5092574
Coord C2 exon
chr16:5091938-5092030
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTTTCTTTTACCCAGGAC
3' ss Score
9.32
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AACTTGCTTGATGAGCTAGCAAGCAGGGAACAGGAGGTGCAGAAGGTCTATGCAGATTCCCAGCAGTACCAGCAAGCGGTGAAG
Seq A exon
GACTATGAACTTGAAGCAGAGAAGCTAAGGTCCTTGCTGGACCTGGAGAATGGACGGAACAGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAG
Seq C2 exon
GAAGCTGCTCTTGCTGCCAAGTTCACAGAGGTTAATGCCATCAACAGACAGAGGCTACAGAATTTGGAGTTTGCACTGAATCTCTTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.538 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAAGCAGGGAACAGGAG
R:
CTGTCTCAAGAGATTCAGTGCA
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: