DreEX0057489 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36321151-36322380:-
Coord C1 exon
chr3:36322297-36322380
Coord A exon
chr3:36322086-36322202
Coord C2 exon
chr3:36321151-36321243
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTTTTGGCTTTCAGGAC
3' ss Score
10.75
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AATCTGCTCTCTGACATCGCGAGGAAGGAATCAGACCTAAACAATGTGTCAAGAAATGCGCAGCTTTATCAGCAAGCAGTAAAG
Seq A exon
GACTATGAAAATGAAGCAGAGCGGTTTAAATCCATCCTCGACCTTGAAGACGGCTTGGTTCCCCAGACATACAAAAGGAGCAGACTTGAATCTCCTGCCATGAAAGTGAATAGAGAG
Seq C2 exon
GAATCTGCAATTGAGGCAAAATTCACCGAAGTAAATGCTGTGAACAAGCAGAGACTGCAGAACCTAGAATTTGCCCAAAGCCTTCTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'26-25,'26-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.333 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCTCTGACATCGCGA
R:
TGGTTAAGAAGGCTTTGGGCA
Band lengths:
175-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]