GgaEX0002712 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14024897-14026279:-
Coord C1 exon
chr14:14026196-14026279
Coord A exon
chr14:14025654-14025770
Coord C2 exon
chr14:14024897-14024989
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGGGAACTTCTTCCCACAGGAC
3' ss Score
8.22
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
Seq A exon
GACTACGAGCTGGAAGCTGAGAAGCTACGGTCCATCCTCGACCTTGAGAATGGACGCAATGGGTACATGAGCAAGAAGCCTAGGCTGCAATCTCCAGCCGCAAAAGTGAAAGAGGAG
Seq C2 exon
GAAGCTGTTCTGGCAGCCAAGTTCACCGAAGTGAATGCTGTGAATAGGCAGAGGCTGCAGAACCTGGAATTTGCTCAGAGCCTCCTGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.436 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGGTGACATCGCAAGC
R:
GCTCTGAGCAAATTCCAGGTTCT
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]