BtaEX6108389 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3970293-3971782:-
Coord C1 exon
chr25:3971699-3971782
Coord A exon
chr25:3970870-3970986
Coord C2 exon
chr25:3970293-3970385
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCTCGTGTCTCTTACCCAGGAC
3' ss Score
8.4
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AACCTACTAGATGAAATAGCAAGAAGGGAAGAGGAAGTGCAGAAAGTCCACACGCACTCCCAGCAGTACCAGCAGGCTGTCAAG
Seq A exon
GACTACGAGTTGGAAGCAGAGAAACTCAGGTCCCTCCTTGACTTGGAGAATGGAAGGAGCAGCCACGTGAGCAAGCGGGCCAGGCTCCAGTCCCCTGCCACCAAAGTGAGGGAAGAG
Seq C2 exon
GAAGCAGCTCTTGCTGCCAAGTTTACGGAGGTTAATGCCATCAACAGACAGAGACTGCAGAACCTGGAGTTTGCACTGACCCTCCTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=0.487 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTAGATGAAATAGCAAGAAGGG
R:
TCTCAGGAGGGTCAGTGCAAA
Band lengths:
172-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]