RnoEX6046159 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10683825-10685220:+
Coord C1 exon
chr10:10683825-10683908
Coord A exon
chr10:10684577-10684693
Coord C2 exon
chr10:10685128-10685220
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTATCTTTCTTTTACCCAGGAC
3' ss Score
8.63
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AACTTGCTTGATGAGATAGCAAGCATGGAACAAGGGGCGCAGAAGGTCTACGCAGACTCCCAACAGTACCAGCAAGCAGTGAAG
Seq A exon
GACTATGAGCTTGAAGCAGAGAAGCTAAGGTCCCTGCTGGACCTGGAGAACGGACGGAACAGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAG
Seq C2 exon
GAAGCTGCTCTTGCTGCCAAGTTCACAGAAGTTAATGCCATCAACAGACAGAGGCTACAAAATTTGGAGTTTGCACTGAATCTCTTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.564 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGATAGCAAGCATGGAACA
R:
CTGTCTCAAGAGATTCAGTGCA
Band lengths:
170-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]