HsaEX6042185 @ hg38
Exon Skipping
Gene
ENSG00000118898 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr16:4885094-4895716:-
Coord C1 exon
chr16:4895594-4895716
Coord A exon
chr16:4895261-4895407
Coord C2 exon
chr16:4885094-4885113
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTGACCCCGTTCTCTCCAGGAC
3' ss Score
10
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
TTTCACGAAGACGTGAAGGACGCTCAGGAGCTGCTGCGCAAGGTGGACTCGGACCTGAACCAGAAGTATGGCCCTGACTTCAAGGACCGGTACCAGATTGAGCTGCTGCTGCGGGAGCTGGAT
Seq A exon
GACCAGGAGAAGGTGCTGGACAAGTATGAGGACGTGGTGCAGGGGCTGCAGAAGCGAGGCCAGCAGGTGGTGCCCCTCAAGTACCGCCGGGAGACTCCGCTCAAGCCCATCCCCGTGGAGGCACTCTGTGACTTTGAGGGGGAGCAG
Seq C2 exon
ACCCCAAGGCGGAAAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118898_MULTIEX1-8/18=7-C2
Average complexity
C2
Mappability confidence:
91%=91=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGACGCTCAGGAG
R:
TTCACTTTCCGCCTTGGGGT
Band lengths:
132-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains