BtaEX6108381 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3977859-3978975:-
Coord C1 exon
chr25:3978853-3978975
Coord A exon
chr25:3978609-3978755
Coord C2 exon
chr25:3977859-3978010
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCACTCCCCTCCACATCCAGGAC
3' ss Score
8.54
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCCACAAAGACATGAAGGATGCCCAGGAGCTGCTTCGCAAGGTGGACTCAGACCTGAACCAGAAATACAGCCCTGACTTCAAGGACCGATACCAGATTGAGCTGCTGCTGCGGGAGCTGGAT
Seq A exon
GACCAGGAGAAGGCTCTGGACAAGTACCAGCATGTGGTGCGGGGGCTGCAGAAGCGAGGGCAGCAGGTGGTGCCCCTCAAGTACCGCCGGGAGACGCCCCTCAAGCCCATCCCCGTGGAGGCGCTCTGTGACTTCGAGGGTGACCAG
Seq C2 exon
GGCCTGATCTCTCGGGGCTACAGCTACACCCTGCAGAGGAACAATGGGGAGAGCTGGGACCTCACCGACAGTGCGGGGAACAAGCTGACCGCCCCGGCCGTCTGCTTCATGATCCCGCCCACTGACCCCGAGGCCCTGGCTCTGGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.020 C2=0.255
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(50.6=100)
A:
PF0043516=Spectrin=PD(40.5=65.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATGAAGGATGCCCAGG
R:
GTCAGTGGGCGGGATCATGAA
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]