MmuEX6060699 @ mm9
Exon Skipping
Gene
ENSMUSG00000039457 | Ppl
Description
periplakin [Source:MGI Symbol;Acc:MGI:1194898]
Coordinates
chr16:5101467-5102771:-
Coord C1 exon
chr16:5102649-5102771
Coord A exon
chr16:5102387-5102533
Coord C2 exon
chr16:5101467-5101618
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCGCTACTCTTACAGGAC
3' ss Score
9.45
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTTCACAAAGACATGAAGGATGCTCAGGAGCTGCTACGCAAGGTGGACTCAGACTTGAACCAGAAATATAGCCCTGACTTCAAAGACCGGTATCAGATAGAGCTGTTGCTTCGGGAACTGGAT
Seq A exon
GACCAGGAGAAGGCTCTGGACAAGTATGAGGATGTGGTGCGAGGGCTGCAGAGGCGAGGGCAGCAAGTGGTGCCACTCAAGTACCGCCGCGAGACGCCGCTCAAGCCCATCCCTGTGGAGGCTCTCTGTGACTTTGAGAGTGACCAG
Seq C2 exon
GGCCTCATCTCGCGGGGCTATAGCTACACACTGCAGAAGAACAACGGGGAGAGCTGGGAGCTGACAGACAGCACTGGGAAGAAGCTGGCTGCCCCAGCCGTCTGCTTCATCATTCCCCCCACCGACCCCGAGGCCTTGGCTCTTGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039457-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(50.6=100)
A:
PF0043516=Spectrin=PD(40.5=65.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGCAAGGTGGACTCAGAC
R:
CTGTCAGCAAGAGCCAAGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: