GgaEX0002711 @ galGal3
Exon Skipping
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14030133-14031636:-
Coord C1 exon
chr14:14031514-14031636
Coord A exon
chr14:14030663-14030809
Coord C2 exon
chr14:14030133-14030284
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTCATTCCCCCATGCTAGGAC
3' ss Score
8.15
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
Seq A exon
GACCAAGAGAAGGCCCTGGAGAAGTACGATGCCGTGGTGCAGTCGCTGCAGGAGCGCAGCCAGCACATCCTGCCCCTGCGGTACCGCCGGCTGCCACCACCACAGCCCATCCCTGTGGAGGCTCTGTGCGAGTATGAGGGCGAGCAG
Seq C2 exon
GGCCAGATAACCCGAGGAGCGCACTACACCCTGCAGAAGAACAGTGGAGACATCTGGGAAGTGATGGACGGTGCTGGAGGTGCCATCAGTGCCCCGGGTGTCTGCTTCATGATCCCCCCTCCAGATGCAGAGGCAATAGCACTGGCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.122 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAGCTCTTGAAGAAA
R:
GTCTGCCAGTGCTATTGCCTC
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]