RnoEX6046167 @ rn6
Exon Skipping
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10674650-10676006:+
Coord C1 exon
chr10:10674650-10674772
Coord A exon
chr10:10674929-10675075
Coord C2 exon
chr10:10675855-10676006
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTGCTGCTCTTCCAGGAC
3' ss Score
10.09
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTTCACAAAGATATGAAGGATGCTCAGGAACTGCTGCGCAAGGTGGACTCAGACTTGAACCAGAAATACAGCCCTGACTTCAAAGACCGATATCAGATAGAGCTGTTGCTTCGGGAGCTGGAT
Seq A exon
GACCAGGAGAAGGCTCTGGACAAGTATGAGGATGTGGTGCGGGGGCTGCAGAAGCGAGGGCAGCAAGTGCTGCCACTCAAGTACCGGCGTGAGACGCCACTCAAGCCCATCCCTGTGGAGGCCCTCTGTGACTTTGAGGGTGACCAG
Seq C2 exon
GGCCTAATCTCCCGGGGCTACAGCTACACGCTGCAGAAGAACAACGGGGAGAGCTGGGAGCTGACAGACAGCACTGGGAAGAAGCTGATGGCCCCAGCTGTCTGCTTCATCATTCCCCCCACCGACCCCGAGGCCTTGGCTCTCTCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(50.6=100)
A:
PF0043516=Spectrin=PD(40.5=65.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCAAGGTGGACTCAG
R:
CTGTCCGAGAGAGCCAAGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]