DreEX6017810 @ danRer10
Exon Skipping
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36327770-36330504:-
Coord C1 exon
chr3:36330382-36330504
Coord A exon
chr3:36328215-36328361
Coord C2 exon
chr3:36327770-36327921
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTGCATTGACAGGAT
3' ss Score
7.64
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
TTCCAAAAGGAGGCAAGAGACACCAGTGACTTGATGAAGCGCCTGGAAACAGAGATCAACCAGAAGTATAATCCTGAGTTCAAAGACATGTATCAGATGGAGGGTCTGATTGCTGACCTAGAT
Seq A exon
GATCAGGCAAAGGCCATGGACCACTTCGACGAGCGTCTGAAAAACCTCCAGAAACGCAGCTTGCAGGTTCTCCCTCTGAAGTACCGCAGGGAGACTCCTCAAAAACTGCTCCCTATCGAGGCTCTGTGTGAATACGATGCAGAAGAG
Seq C2 exon
GGTTCAATTTTGCGAGGGGAGCGATACACCCTGCTCAGGAACAATGGGCCCAAATGGGACGTGAAGGACGCTAATGGACGCACCATGAGCGCTCCAGGAGTTTGCTTCATAATCCCTCCAACCGACCCTGAAGCTGTGGCCAGTGCTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.041 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGAGACACCAGTGACT
R:
CAGGGTCGGTTGGAGGGATTA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]